Authors

Dongjie Wang

Publications 3

Preprint Open access

RASPER: Reward-Aligned Summarization of Clinical Notes for EHR Outcome Prediction

Unstructured discharge notes in Electronic Health Records (EHRs) often carry signal complementary to structured medical codes, holding patient-specific evidence that standardized cohort-level codes alone cannot capture. However, this evidence in notes is frequently buried in lengthy, noisy text that is not intentionall …

Preprint Open access

SoftGene: Protein Language Model-Enhanced Soft Prompting for Interpretable Gene Set Annotation

Gene set analysis is a cornerstone of functional genomics, yet it remains labor-intensive and heavily dependent on manual curation and expert biological interpretation. While Large Language Models (LLMs) have emerged as powerful tools for genomic reasoning and annotation, most existing approaches rely on symbolic gene …

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